CHANGES

0.2.19

  • gaf parsing: reject expressions in extensions field that have bad IDs, fixes #99
  • lexical mapping: improved handling of xrefs

0.2.18

  • lexmap output now excludes index column
  • allow custom synsets for lexmap
  • fixed bug whereby bulk golr fetch not iterated

0.2.17

  • Fixed bug where CHEBI xref labels were treated as class labels
  • Various lexical mapping improvements #97 #95

0.2.16

  • Added ability to parse skos
  • Added more detailed scoring and documentation for lexical mapping.
  • lexmap fixes: Fixed #93, #94

0.2.15

  • lexical mappings #88 #89
  • set ontology id when retrieving from JSON or SPARQL

0.2.11

  • #63, added rdf generation
  • #62, python version check, @diekhans
  • using rst for README
  • #56 , assocmodel now allows retrieval of full association objects
  • Added GPI writer

0.2.10

  • Fixed bug with handling of replaced_by fields in obsolete nodes, #51

0.2.9

  • Turned down logging from info to warn for skipped lines

0.2.7

  • gaf parsing is more robust to gaf errors
  • bugfix function call parameter ordering

0.2.6

0.2.5

  • bugfix for processing gaf lines that do not have the right number of columns

0.2.4

  • added ecomap.py
  • fixes for planteome