CHANGES
0.2.19
- gaf parsing: reject expressions in extensions field that have bad IDs, fixes #99
- lexical mapping: improved handling of xrefs
0.2.18
- lexmap output now excludes index column
- allow custom synsets for lexmap
- fixed bug whereby bulk golr fetch not iterated
0.2.17
- Fixed bug where CHEBI xref labels were treated as class labels
- Various lexical mapping improvements #97 #95
0.2.16
- Added ability to parse skos
- Added more detailed scoring and documentation for lexical mapping.
- lexmap fixes: Fixed #93, #94
0.2.15
- lexical mappings #88 #89
- set ontology id when retrieving from JSON or SPARQL
0.2.11
- #63, added rdf generation
- #62, python version check, @diekhans
- using rst for README
- #56 , assocmodel now allows retrieval of full association objects
- Added GPI writer
0.2.10
- Fixed bug with handling of replaced_by fields in obsolete nodes, #51
0.2.9
- Turned down logging from info to warn for skipped lines
0.2.7
- gaf parsing is more robust to gaf errors
- bugfix function call parameter ordering
0.2.5
- bugfix for processing gaf lines that do not have the right number of columns
0.2.4
- added ecomap.py
- fixes for planteome